@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/149/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/148/fypo.obo @ File Written at 2013.11.11 at 08:44:01 PST @ Number of classes changed: 43 @ Number of classes added: 2 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#GO_0016615 label: malate dehydrogenase activity - SubClassOf('malate dehydrogenase activity' 'oxidoreductase activity, acting on CH-OH group of donors') --- Class Changed: http://www.geneontology.org/go#FYPO_0002709 label: spindle pole body absent from cell + EquivalentClasses('spindle pole body absent from cell' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'spindle pole body')) ) + SubClassOf('spindle pole body absent from cell' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('spindle pole body absent from cell' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('inheres_in' 'cell') ObjectSomeValueFrom('towards' 'spindle pole body')) ) - SubClassOf('spindle pole body absent from cell' ObjectSomeValueFrom('inheres_in' 'cell')) --- Class Changed: http://www.geneontology.org/go#GO_0004471 label: malate dehydrogenase (decarboxylating) (NAD+) activity - SubClassOf('malate dehydrogenase (decarboxylating) (NAD+) activity' 'malic enzyme activity') - SubClassOf('malate dehydrogenase (decarboxylating) (NAD+) activity' 'oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor') --- Class Changed: http://www.geneontology.org/go#FYPO_0002816 label: inviable after spore germination, without cell division, multinucleate cell with elongated germ tube - SubClassOf('inviable after spore germination, without cell division, multinucleate cell with elongated germ tube' 'inviable after spore germination, without cell division, with elongated germ tube') --- Class Changed: http://www.geneontology.org/go#GO_0072426 label: response to G2 DNA damage checkpoint signaling - SubClassOf('response to G2 DNA damage checkpoint signaling' 'response to DNA damage checkpoint signaling') --- Class Changed: http://www.geneontology.org/go#FYPO_0002004 label: microtubules absent from cell + EquivalentClasses('microtubules absent from cell' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'microtubule')) ) + SubClassOf('microtubules absent from cell' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('microtubules absent from cell' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('inheres_in' 'cell') ObjectSomeValueFrom('towards' 'microtubule')) ) - SubClassOf('microtubules absent from cell' ObjectSomeValueFrom('inheres_in' 'cell')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002622 label: decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity + SubClassOf('decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity' 'decreased catalytic activity') + SubClassOf('decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectSomeValueFrom('inheres_in' GO_0016619)) + EquivalentClasses('decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('inheres_in' GO_0016619)) ) - SubClassOf('decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectSomeValueFrom('inheres_in' 'malate dehydrogenase (decarboxylating) (NAD+) activity')) - SubClassOf('decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity' 'decreased oxidoreductase activity') - EquivalentClasses('decreased malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('inheres_in' 'malate dehydrogenase (decarboxylating) (NAD+) activity')) ) --- Class Changed: http://www.geneontology.org/go#GO_0072423 label: response to DNA damage checkpoint signaling - SubClassOf('response to DNA damage checkpoint signaling' 'response to DNA integrity checkpoint signaling') --- Class Changed: http://www.geneontology.org/go#FYPO_0000118 label: multiseptate + EquivalentClasses('multiseptate' ObjectIntersectionOf(PATO_0002002 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'barrier septum')) ) - SubClassOf('multiseptate' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - EquivalentClasses('multiseptate' ObjectIntersectionOf(PATO_0002002 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'barrier septum')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0000429 label: delayed G0 to G1 transition + SubClassOf('delayed G0 to G1 transition' 'abnormal cellular process') - SubClassOf('delayed G0 to G1 transition' 'abnormal cell cycle process') --- Class Changed: http://www.geneontology.org/go#FYPO_0000427 label: abnormal G1 to G0 transition + SubClassOf('abnormal G1 to G0 transition' 'abnormal cellular process') - SubClassOf('abnormal G1 to G0 transition' 'abnormal cell cycle process') --- Class Changed: http://www.geneontology.org/go#GO_0070314 label: G1 to G0 transition + SubClassOf('G1 to G0 transition' 'single-organism cellular process') - SubClassOf('G1 to G0 transition' 'cell cycle process') --- Class Changed: http://www.geneontology.org/go#FYPO_0000229 label: cut + SubClassOf('cut' 'inviable vegetative cell') - SubClassOf('cut' 'inviable cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0001491 label: viable vegetative cell + EquivalentClasses('viable vegetative cell' ObjectIntersectionOf('viable cell' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) ) + SubClassOf('viable vegetative cell' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('viable vegetative cell' ObjectIntersectionOf(PATO_0000719 ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) ) - SubClassOf('viable vegetative cell' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) --- Class Changed: http://www.geneontology.org/go#FYPO_0000949 label: aseptate + EquivalentClasses('aseptate' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'barrier septum')) ) + SubClassOf('aseptate' ObjectSomeValueFrom('inheres_in' 'barrier septum')) + SubClassOf('aseptate' 'abnormal septum') - EquivalentClasses('aseptate' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'barrier septum')) ) - SubClassOf('aseptate' ObjectSomeValueFrom('towards' 'barrier septum')) - SubClassOf('aseptate' 'abnormal subcellular component during vegetative growth') - SubClassOf('aseptate' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) --- Class Changed: http://www.geneontology.org/go#GO_0032993 label: protein-DNA complex - SubClassOf('protein-DNA complex' 'macromolecular complex') --- Class Changed: http://www.geneontology.org/go#GO_0045023 label: G0 to G1 transition + SubClassOf('G0 to G1 transition' 'single-organism cellular process') - SubClassOf('G0 to G1 transition' 'cell cycle process') --- Class Changed: http://www.geneontology.org/go#FYPO_0002018 label: mitotic spindle absent from cell + EquivalentClasses('mitotic spindle absent from cell' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'mitotic spindle')) ) - EquivalentClasses('mitotic spindle absent from cell' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'mitotic spindle')) ) - SubClassOf('mitotic spindle absent from cell' 'abnormal vegetative cell morphology') - SubClassOf('mitotic spindle absent from cell' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) --- Class Changed: http://www.geneontology.org/go#FYPO_0000369 label: vacuoles absent + EquivalentClasses('vacuoles absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'fungal-type vacuole')) ) + SubClassOf('vacuoles absent' ObjectSomeValueFrom('inheres_in' 'fungal-type vacuole')) + SubClassOf('vacuoles absent' 'abnormal vacuole') - EquivalentClasses('vacuoles absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'fungal-type vacuole')) ) - SubClassOf('vacuoles absent' ObjectSomeValueFrom('towards' 'fungal-type vacuole')) - SubClassOf('vacuoles absent' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) --- Class Changed: http://www.geneontology.org/go#GO_1990123 label: L-glutamate import into cell - SubClassOf('L-glutamate import into cell' 'L-alpha-amino acid transmembrane transport') --- Class Changed: http://www.geneontology.org/go#FYPO_0000358 label: mating projection absent + EquivalentClasses('mating projection absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('inheres_in' 'mating projection')) ) + SubClassOf('mating projection absent' ObjectSomeValueFrom('inheres_in' 'mating projection')) + SubClassOf('mating projection absent' 'abnormal shmoo morphology') - SubClassOf('mating projection absent' ObjectSomeValueFrom('towards' 'mating projection')) - SubClassOf('mating projection absent' ObjectSomeValueFrom('inheres_in' 'cell')) - EquivalentClasses('mating projection absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('inheres_in' 'cell') ObjectSomeValueFrom('towards' 'mating projection')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002158 label: abolished response to mitotic G2/M transition DNA damage checkpoint signaling - SubClassOf('abolished response to mitotic G2/M transition DNA damage checkpoint signaling' 'abolished response to mitotic G2/M transition checkpoint signaling') - EquivalentClasses('abolished response to mitotic G2/M transition DNA damage checkpoint signaling' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'response to mitotic G2 DNA damage checkpoint signaling')) ) - SubClassOf('abolished response to mitotic G2/M transition DNA damage checkpoint signaling' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished response to mitotic G2/M transition DNA damage checkpoint signaling' ObjectSomeValueFrom('towards' 'response to mitotic G2 DNA damage checkpoint signaling')) - SubClassOf('abolished response to mitotic G2/M transition DNA damage checkpoint signaling' ObjectSomeValueFrom('has_output' 'advanced cell cycle phase transition')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002817 label: arrested meiosis I - EquivalentClasses('arrested meiosis I' ObjectIntersectionOf(PATO_0001561 ObjectSomeValueFrom('during' 'meiosis') ObjectSomeValueFrom('inheres_in' 'meiosis I')) ) - SubClassOf('arrested meiosis I' 'arrested meiosis') - SubClassOf('arrested meiosis I' ObjectSomeValueFrom('during' 'meiosis')) - SubClassOf('arrested meiosis I' ObjectSomeValueFrom('inheres_in' 'meiosis I')) --- Class Changed: http://www.geneontology.org/go#FYPO_0000950 label: elongated aseptate cell + SubClassOf('elongated aseptate cell' 'abnormal septum morphology') --- Class Changed: http://www.geneontology.org/go#FYPO_0002159 label: decreased 1,3-beta-D-glucan synthase activity + SubClassOf('decreased 1,3-beta-D-glucan synthase activity' 'abolished response to mitotic G2/M transition DNA damage checkpoint signaling') --- Class Changed: http://www.geneontology.org/go#GO_0000775 label: chromosome, centromeric region - SubClassOf('chromosome, centromeric region' 'protein-DNA complex') --- Class Changed: http://www.geneontology.org/go#FYPO_0001008 label: contractile ring absent + EquivalentClasses('contractile ring absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'actomyosin contractile ring')) ) + SubClassOf('contractile ring absent' ObjectSomeValueFrom('inheres_in' 'actomyosin contractile ring')) - SubClassOf('contractile ring absent' ObjectSomeValueFrom('towards' 'actomyosin contractile ring')) - SubClassOf('contractile ring absent' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - EquivalentClasses('contractile ring absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'actomyosin contractile ring')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002621 label: abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity + EquivalentClasses('abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' GO_0016619) ObjectSomeValueFrom('qualifier' PATO_0000460)) ) + SubClassOf('abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity' 'abnormal catalytic activity') + SubClassOf('abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectSomeValueFrom('inheres_in' GO_0016619)) - SubClassOf('abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectSomeValueFrom('inheres_in' 'malate dehydrogenase (decarboxylating) (NAD+) activity')) - EquivalentClasses('abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' 'malate dehydrogenase (decarboxylating) (NAD+) activity') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal malate dehydrogenase (oxaloacetate-decarboxylating) activity' 'abnormal oxidoreductase activity') --- Class Changed: http://www.geneontology.org/go#FYPO_0002789 label: small vacuoles during stationary phase + SubClassOf('small vacuoles during stationary phase' 'small vacuoles during vegetative growth') - SubClassOf('small vacuoles during stationary phase' 'small vacuoles') --- Class Changed: http://www.geneontology.org/go#FYPO_0002726 label: abnormal saccharopine dehydrogenase activity + SubClassOf('abnormal saccharopine dehydrogenase activity' 'abnormal peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity') + EquivalentClasses('abnormal saccharopine dehydrogenase activity' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' 'peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity') ObjectSomeValueFrom('qualifier' PATO_0004753)) ) + SubClassOf('abnormal saccharopine dehydrogenase activity' ObjectSomeValueFrom('inheres_in' 'peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity')) + SubClassOf('abnormal saccharopine dehydrogenase activity' ObjectSomeValueFrom('qualifier' PATO_0004753)) - SubClassOf('abnormal saccharopine dehydrogenase activity' ObjectSomeValueFrom('inheres_in' 'saccharopine dehydrogenase activity')) - SubClassOf('abnormal saccharopine dehydrogenase activity' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal saccharopine dehydrogenase activity' 'abnormal oxidoreductase activity') - EquivalentClasses('abnormal saccharopine dehydrogenase activity' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('inheres_in' 'saccharopine dehydrogenase activity') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) --- Class Changed: http://www.geneontology.org/go#GO_1902475 label: L-alpha-amino acid transmembrane transport - SubClassOf('L-alpha-amino acid transmembrane transport' 'L-amino acid transport') - SubClassOf('L-alpha-amino acid transmembrane transport' 'amino acid transmembrane transport') --- Class Changed: http://www.geneontology.org/go#GO_0072402 label: response to DNA integrity checkpoint signaling - SubClassOf('response to DNA integrity checkpoint signaling' 'response to cell cycle checkpoint signaling') --- Class Changed: http://www.geneontology.org/go#GO_0004470 label: malic enzyme activity - SubClassOf('malic enzyme activity' 'malate dehydrogenase activity') --- Class Changed: http://www.geneontology.org/go#FYPO_0001489 label: inviable vegetative cell + EquivalentClasses('inviable vegetative cell' ObjectIntersectionOf('inviable cell' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) ) + SubClassOf('inviable vegetative cell' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('inviable vegetative cell' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - EquivalentClasses('inviable vegetative cell' ObjectIntersectionOf(PATO_0000718 ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002791 label: small vacuoles present in greater numbers during stationary phase + SubClassOf('small vacuoles present in greater numbers during stationary phase' 'small vacuoles present in greater numbers during vegetative growth') - SubClassOf('small vacuoles present in greater numbers during stationary phase' 'small vacuoles present in greater numbers') --- Class Changed: http://www.geneontology.org/go#GO_0072435 label: response to mitotic G2 DNA damage checkpoint signaling - SubClassOf('response to mitotic G2 DNA damage checkpoint signaling' 'response to G2 DNA damage checkpoint signaling') - SubClassOf('response to mitotic G2 DNA damage checkpoint signaling' 'response to mitotic cell cycle checkpoint signaling') --- Class Changed: http://www.geneontology.org/go#FYPO_0000363 label: peroxisomes absent + SubClassOf('peroxisomes absent' ObjectSomeValueFrom('inheres_in' 'peroxisome')) + EquivalentClasses('peroxisomes absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'peroxisome')) ) - SubClassOf('peroxisomes absent' ObjectSomeValueFrom('towards' 'peroxisome')) - SubClassOf('peroxisomes absent' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - EquivalentClasses('peroxisomes absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'peroxisome')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002109 label: inviable bottle-shaped cell + SubClassOf('inviable bottle-shaped cell' 'inviable vegetative cell') - SubClassOf('inviable bottle-shaped cell' 'inviable cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0001011 label: filamentous actin absent + EquivalentClasses('filamentous actin absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'filamentous actin')) ) + SubClassOf('filamentous actin absent' ObjectSomeValueFrom('inheres_in' 'filamentous actin')) - SubClassOf('filamentous actin absent' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - EquivalentClasses('filamentous actin absent' ObjectIntersectionOf(PATO_0002000 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'filamentous actin')) ) - SubClassOf('filamentous actin absent' ObjectSomeValueFrom('towards' 'filamentous actin')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002108 label: viable bottle-shaped cell + SubClassOf('viable bottle-shaped cell' 'viable vegetative cell') - SubClassOf('viable bottle-shaped cell' 'viable cell') --- Class Changed: http://www.geneontology.org/go#FYPO_0002727 label: decreased saccharopine dehydrogenase activity + SubClassOf('decreased saccharopine dehydrogenase activity' 'decreased peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity') --- Class Changed: http://www.geneontology.org/go#FYPO_0001006 label: inviable, elongated, multinucleate dumbbell-shaped cell + SubClassOf('inviable, elongated, multinucleate dumbbell-shaped cell' 'inviable elongated multinucleate vegetative cell with abnormal septum morphology') --- Class Changed: http://www.geneontology.org/go#FYPO_0001165 label: inviable cell following anaerobic growth + SubClassOf('inviable cell following anaerobic growth' 'inviable vegetative cell') - SubClassOf('inviable cell following anaerobic growth' 'inviable cell') - SubClassOf('inviable cell following anaerobic growth' 'vegetative cell phenotype') @New Classes --- !New Class!: http://www.geneontology.org/go#GO_0016619 --- !New Class!: http://www.geneontology.org/go#PATO_0004753